Local selection across a latitudinal gradient shapes nucleotide diversity in balsam poplar, Populus balsamifera L.
Identifieur interne : 002E02 ( Main/Exploration ); précédent : 002E01; suivant : 002E03Local selection across a latitudinal gradient shapes nucleotide diversity in balsam poplar, Populus balsamifera L.
Auteurs : Stephen R. Keller [États-Unis] ; Nicholas Levsen ; P R K. Ingvarsson ; Matthew S. Olson ; Peter TiffinSource :
- Genetics [ 1943-2631 ] ; 2011.
Descripteurs français
- KwdFr :
- MESH :
- composition chimique : Nucléotides.
- génétique : Populus, Variation génétique.
- Adaptation biologique, Environnement, Fréquence d'allèle, Gènes de plante, Modèles génétiques, Phénotype, Simulation numérique, Sélection génétique.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Nucleotides.
- genetics : Genetic Variation, Populus.
- Adaptation, Biological, Computer Simulation, Environment, Gene Frequency, Genes, Plant, Models, Genetic, Phenotype, Selection, Genetic.
Abstract
Molecular studies of adaptive evolution often focus on detecting selective sweeps driven by positive selection on a species-wide scale; however, much adaptation is local, particularly of ecologically important traits. Here, we look for evidence of range-wide and local adaptation at candidate genes for adaptive phenology in balsam poplar, Populus balsamifera, a widespread forest tree whose range extends across environmental gradients of photoperiod and growing season length. We examined nucleotide diversity of 27 poplar homologs of the flowering-time network-a group of genes that control plant developmental phenology through interactions with environmental cues such as photoperiod and temperature. Only one gene, ZTL2, showed evidence of reduced diversity and an excess of fixed replacement sites, consistent with a species-wide selective sweep. Two other genes, LFY and FRI, harbored high levels of nucleotide diversity and exhibited elevated differentiation between northern and southern accessions, suggesting local adaptation along a latitudinal gradient. Interestingly, FRI has also been identified as a target of local selection between northern and southern accessions of Arabidopsis thaliana, indicating that this gene may be commonly involved in ecological adaptation in distantly related species. Our findings suggest an important role for local selection shaping molecular diversity and reveal limitations of inferring molecular adaptation from analyses designed only to detect species-wide selective sweeps.
DOI: 10.1534/genetics.111.128041
PubMed: 21624997
PubMed Central: PMC3176098
Affiliations:
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Here, we look for evidence of range-wide and local adaptation at candidate genes for adaptive phenology in balsam poplar, Populus balsamifera, a widespread forest tree whose range extends across environmental gradients of photoperiod and growing season length. We examined nucleotide diversity of 27 poplar homologs of the flowering-time network-a group of genes that control plant developmental phenology through interactions with environmental cues such as photoperiod and temperature. Only one gene, ZTL2, showed evidence of reduced diversity and an excess of fixed replacement sites, consistent with a species-wide selective sweep. Two other genes, LFY and FRI, harbored high levels of nucleotide diversity and exhibited elevated differentiation between northern and southern accessions, suggesting local adaptation along a latitudinal gradient. Interestingly, FRI has also been identified as a target of local selection between northern and southern accessions of Arabidopsis thaliana, indicating that this gene may be commonly involved in ecological adaptation in distantly related species. Our findings suggest an important role for local selection shaping molecular diversity and reveal limitations of inferring molecular adaptation from analyses designed only to detect species-wide selective sweeps.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21624997</PMID><DateCompleted><Year>2011</Year><Month>12</Month><Day>19</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1943-2631</ISSN><JournalIssue CitedMedium="Internet"><Volume>188</Volume><Issue>4</Issue><PubDate><Year>2011</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Genetics</Title><ISOAbbreviation>Genetics</ISOAbbreviation></Journal><ArticleTitle>Local selection across a latitudinal gradient shapes nucleotide diversity in balsam poplar, Populus balsamifera L.</ArticleTitle><Pagination><MedlinePgn>941-52</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1534/genetics.111.128041</ELocationID><Abstract><AbstractText>Molecular studies of adaptive evolution often focus on detecting selective sweeps driven by positive selection on a species-wide scale; however, much adaptation is local, particularly of ecologically important traits. Here, we look for evidence of range-wide and local adaptation at candidate genes for adaptive phenology in balsam poplar, Populus balsamifera, a widespread forest tree whose range extends across environmental gradients of photoperiod and growing season length. We examined nucleotide diversity of 27 poplar homologs of the flowering-time network-a group of genes that control plant developmental phenology through interactions with environmental cues such as photoperiod and temperature. Only one gene, ZTL2, showed evidence of reduced diversity and an excess of fixed replacement sites, consistent with a species-wide selective sweep. Two other genes, LFY and FRI, harbored high levels of nucleotide diversity and exhibited elevated differentiation between northern and southern accessions, suggesting local adaptation along a latitudinal gradient. Interestingly, FRI has also been identified as a target of local selection between northern and southern accessions of Arabidopsis thaliana, indicating that this gene may be commonly involved in ecological adaptation in distantly related species. 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Ingvarsson</name><name sortKey="Levsen, Nicholas" sort="Levsen, Nicholas" uniqKey="Levsen N" first="Nicholas" last="Levsen">Nicholas Levsen</name><name sortKey="Olson, Matthew S" sort="Olson, Matthew S" uniqKey="Olson M" first="Matthew S" last="Olson">Matthew S. Olson</name><name sortKey="Tiffin, Peter" sort="Tiffin, Peter" uniqKey="Tiffin P" first="Peter" last="Tiffin">Peter Tiffin</name></noCountry><country name="États-Unis"><noRegion><name sortKey="Keller, Stephen R" sort="Keller, Stephen R" uniqKey="Keller S" first="Stephen R" last="Keller">Stephen R. Keller</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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